Migrate#

Migration pages answer two questions: what changes when a workflow moves from GECKO 3 to GECKO 4, and what differs when a workflow moves between MATLAB and Python.

Page

Content

GECKO 3 to GECKO 4

the changes that pass without an error, the changes that raise one, new, removed and renamed functions, and how to stay on GECKO 3

Project format 4

the project folder, model_adapter.toml, kcat source files and the ecModel format

Upgrade a GECKO 3 project

the steps of upgradeGECKOproject and upgradeEcModel

Kcat assignment

kcat source files, stages and presets of collectKcats and assignKcats

GECKO and geckopy

what each implementation has, and where they answer the same question differently